I’m curious how Japan’s train network deals with these issues. That map looks like the train network in Tokyo alone. Japan’s network is also quite large, densely packed, and with very frequent trains. Despite Japan being well known for timeliness of its trains, it does have its occasional delays, but not often enough to think about.
That's always the case for through stations, I believe. However even terminus stations don't have their platforms locked to a fixed destination. Milan Central station has 24 platforms and each of them hosts multiple routes. Rome Termini has 32 platforms, same thing. You can monitor departures at this link, if you are very patient to keep track of them